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General Analysis Software

Martinos Center Software

Software Name Last Updated NMR Path Maintainer Instructions
AFNI 5/22/2023 /usr/pubsw/packages/AFNI help@nmr Installed version 23.1.05
ANTs 1/21/2020 /usr/pubsw/packages/ANTS help@nmr Installed version 2.3.4
ATPP_GUI 6/7/2017 /usr/pubsw/packages/ATPP help@nmr Installed version 2.1.0
BART Toolbox 10/17/2017 /usr/pubsw/packages/bart help@nmr Installed version 0.4.01
BASIL 4/11/18 /usr/pubsw/packages/oxford_asl help@nmr /usr/pubsw/packages/oxford_asl/README.txt
Caffe 11/25/2015 /usr/pubsw/packages/caffe help@nmr
DicomBrowser 10/21/2015 /usr/pubsw/bin/dicombrowser gwarner
Docker On select machines upon request help@nmr Docker @ Martinos
DSI Studio 9/3/2021 /usr/pubsw/packages/DSI-Studio help@nmr
fMRIPrep 10/10/2023 /usr/pubsw/packages/fmriprep/ help@nmr Built Singularity version 23.1.4
Freesurfer weekly /usr/local/freesurfer fsdev http://www.freesurfer.net/fswiki/InternalFreeSurferDistributions
FSL 12/30/2020 /usr/pubsw/packages/fsl help@nmr https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup
FSLeyes 1/7/2019 /usr/pubsw/packages/FSLeyes help@nmr Installed version 0.27.0
heudiconv 2/27/2020 /usr/pubsw/packages/heudiconv help@nmr Latest Singularity build is heudiconv_0.8.0.sif
ITK 10/30/2014 /usr/pubsw/packages/itk http://itk.org/ITK/resources/resources.html
Mathematica 7/20/15 /usr/pubsw/bin/mathematica help@nmr
Matlab 4/10/2018 /usr/pubsw/bin/matlab help@nmr
Mendeley 6/5/2018 /usr/pubsw/bin/mendeleydesktop help@nmr Installed version 1.19
MRIcron 3/19/2015 /usr/pubsw/packages/MRIcron
MRtrix3 5/11/2023 /usr/pubsw/packages/mrtrix help@nmr
occiput 7/9/2015 /usr/pubsw/packages/occiput occiput@nmr
picasso 10/27/16 /usr/pubsw/packages/picasso
PPI Toolbox 4/11/2014 /usr/pubsw/common/spm/spm8/toolbox/PPPI/ mclaren
Python see list /usr/pubsw/packages/python martinos-python http://freesurfer.net/fswiki/DevelopersGuide/NMRCenterPython/UsersGuide
R 7/14/2020 /usr/pubsw/packages/R help@nmr http://r-project.org (latest installed 4.0.2)
Singularity 1/22/2020 /usr/bin/singularity help@nmr Singularity @ Martinos
Slicer 2/25/2019 /usr/pubsw/packages/slicer/ help@nmr http://slicer.org/slicerWiki/index.php/Main_Page
SlicerSALT 8/1/2017 /usr/pubsw/bin/SlicerSALT help@nmr http://salt.slicer.org/docs/
SPM 2/21/2018 /usr/pubsw/common/spm aschultz Installed version 7219
TORTOISE 6/28/2017 /usr/pubsw/packages/TORTOISE mhibert Installed version 3.0.0
Workbench 6/28/2017 /usr/pubsw/packages/workbench help@nmr Installed version 1.2.3
vtk /usr/pubsw/packages/vtk fsdev

 

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